PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG146900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 226aa    MW: 23912.8 Da    PI: 6.9537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG146900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-103784654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                         +e+Er+RR++++s  ++L +l+Pk +   +s+  ++    L +A  YIk+L
  Pavir.5KG146900.2.p 37 KEIERKRRQQMKSLCATLASLIPKeD---YSRDaMTQLGSLDEAAAYIKKL 84
                         79**********************77...88888***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9563184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-123698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1136100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-53688No hitNo description
SMARTSM003533.7E-73790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-83784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEMGAGKKSR SSSDTATAGK RSSMRSNSSG TTAVERKEIE RKRRQQMKSL CATLASLIPK  60
EDYSRDAMTQ LGSLDEAAAY IKKLKERVDE LQQKRSSAQL MAADTSGGGG GGGGSVASTS  120
AAATAASGGA RSEEDAAEEA AEAPVVEVVH YNDGSSLDVV LISSVERPFK LHEVVTVLEE  180
EGAEIINANL SVVGRKIFHT IHCRAFSPRI GIEVSRVSER LRELV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967962.15e-86PREDICTED: uncharacterized protein LOC101783784
RefseqXP_012701638.15e-86PREDICTED: uncharacterized protein LOC101783784
TrEMBLK3XLV83e-84K3XLV8_SETIT; Uncharacterized protein
STRINGSi002881m8e-84(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.16e-12bHLH family protein